STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEC24BSEC24 homolog B, COPII coat complex component. (616 aa)    
Predicted Functional Partners:
SEC13
SEC13 homolog, nuclear pore and COPII coat complex component.
   
 0.998
SEC24D
SEC24 homolog D, COPII coat complex component.
   
0.982
SEC24C
SEC24 homolog C, COPII coat complex component.
   
0.982
SEC23A
Sec23 homolog A, coat complex II component.
   
 0.979
SEC23B
SEC23 homolog B, coat complex II component.
   
 0.977
SEC31A
SEC31 homolog A, COPII coat complex component.
   
 0.970
ENSCPUP00000007840
annotation not available
   
 0.960
SEC31B
SEC31 homolog B, COPII coat complex component.
   
 0.960
SEC24A
SEC24 homolog A, COPII coat complex component.
  
0.946
SAR1B
Secretion associated Ras related GTPase 1B.
   
 0.946
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.