STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCPUP00000024516annotation not available (99 aa)    
Predicted Functional Partners:
HNRNPM
Heterogeneous nuclear ribonucleoprotein M.
   
 0.888
HNRNPK
Heterogeneous nuclear ribonucleoprotein K.
   
 0.881
DHX9
DExH-box helicase 9.
   
 0.842
ENSCPUP00000002921
annotation not available
   
 0.827
SRSF1
Serine and arginine rich splicing factor 1.
   
 0.794
RBMX
RNA binding motif protein X-linked.
   
 0.780
ENSCPUP00000005646
annotation not available
   
  0.742
HNRNPLL
Heterogeneous nuclear ribonucleoprotein L like.
   
 0.731
ENSCPUP00000024150
annotation not available
   
 0.731
SYNCRIP
Synaptotagmin binding cytoplasmic RNA interacting protein.
   
 0.724
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.