STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KDM8Lysine demethylase 8. (414 aa)    
Predicted Functional Partners:
RPS6
Ribosomal protein S6.
    
   0.822
RCCD1
RCC1 domain containing 1.
    
 
 0.775
HIF1A
Hypoxia inducible factor 1 subunit alpha.
    
 0.638
EPAS1
Endothelial PAS domain protein 1.
    
 0.638
NPAS3
Neuronal PAS domain protein 3.
    
 0.638
ENSCPUP00000023643
annotation not available
    
 0.638
MTG2
Mitochondrial ribosome associated GTPase 2.
 
 
    0.539
JMJD6
Jumonji domain containing 6, arginine demethylase and lysine hydroxylase.
      
 0.531
TRPA1
Transient receptor potential cation channel subfamily A member 1.
    
   0.517
JMJD4
Jumonji domain containing 4.
      
 0.515
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.