STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCPUP00000024701annotation not available (443 aa)    
Predicted Functional Partners:
COL9A2
Collagen type IX alpha 2 chain.
 
 
 
0.929
COL8A2
Collagen type VIII alpha 2 chain.
 
 
 
0.919
ENSCPUP00000024792
annotation not available
 
      0.899
COL10A1
Collagen type X alpha 1 chain.
 
 
 
0.890
MARCO
Macrophage receptor with collagenous structure.
 
  
 
0.866
ENSCPUP00000000773
annotation not available
    
  0.808
COL8A1
Collagen type VIII alpha 1 chain.
 
 
0.697
ENSCPUP00000004492
annotation not available
 
  
  0.649
C1QC
Complement C1q C chain.
  
 
  0.645
COL6A2
Collagen type VI alpha 2 chain.
 
0.600
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.