STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RNF13Ring finger protein 13. (381 aa)    
Predicted Functional Partners:
RPS27A
Ribosomal protein S27a.
    
  0.736
ENSCPUP00000011075
annotation not available
    
  0.666
OTUB1
OTU deubiquitinase, ubiquitin aldehyde binding 1.
    
 0.661
AP3S1
Adaptor related protein complex 3 subunit sigma 1.
    
 
 0.643
SDF2L1
Stromal cell derived factor 2 like 1.
 
      0.616
ENSCPUP00000003594
annotation not available
    
 0.537
HSF2BP
Heat shock transcription factor 2 binding protein.
      
 0.503
SNAPIN
SNAP associated protein.
    
 
 0.494
NUS1
NUS1 dehydrodolichyl diphosphate synthase subunit.
    
 
 0.487
UBE2D2
Ubiquitin conjugating enzyme E2 D2.
    
 0.480
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.