STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCPUP00000024862annotation not available (168 aa)    
Predicted Functional Partners:
ENSCPUP00000028200
annotation not available
   
 0.920
LOC106887983
Synaptojanin-2-binding protein-like.
    
 0.872
CACNA1G
Calcium voltage-gated channel subunit alpha1 G.
    
 0.689
CACNA1H
Calcium voltage-gated channel subunit alpha1 H.
    
 0.689
CACNA1I
Calcium voltage-gated channel subunit alpha1 I.
    
 0.689
SRF
Serum response factor.
    
 0.575
LDB1
LIM domain binding 1.
    
 0.573
LDB2
LIM domain binding 2.
    
 0.573
CACNG2
Calcium voltage-gated channel auxiliary subunit gamma 2.
    
  0.512
CACNG4
Calcium voltage-gated channel auxiliary subunit gamma 4.
    
  0.512
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.