STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106899391Fer-1-like protein 4. (1962 aa)    
Predicted Functional Partners:
SLC17A8
Solute carrier family 17 member 8.
     
 0.537
CAV3
Caveolin 3.
    
 0.535
SYNPR
Synaptoporin.
   
 
 0.460
VAMP1
Vesicle associated membrane protein 1.
     
 0.439
LOC106902636
Vesicle-associated membrane protein 2-like.
     
 0.439
SLC17A6
Solute carrier family 17 member 6.
     
 0.434
CAV1
Caveolin 1.
    
 0.423
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.