STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TMC5Transmembrane channel like 5. (881 aa)    
Predicted Functional Partners:
ARID4A
AT-rich interaction domain 4A.
    
 0.710
ARID4B
AT-rich interaction domain 4B.
    
 0.710
ENSCPUP00000000773
annotation not available
   
 0.706
MYSM1
Histone H2A deubiquitinase MYSM1.
    
 0.652
LEO1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.628
ENSCPUP00000015514
annotation not available
    
 
 0.601
PTK7
Protein tyrosine kinase 7 (inactive).
    
  0.544
SLF1
SMC5-SMC6 complex localization factor 1.
   
 0.541
MIB2
Mindbomb E3 ubiquitin protein ligase 2.
   
  0.531
ENSCPUP00000008288
annotation not available
   
  0.531
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.