STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABHD6Abhydrolase domain containing 6. (337 aa)    
Predicted Functional Partners:
GRIN3A
Glutamate ionotropic receptor NMDA type subunit 3A.
   
 
  0.923
GRIA1
Glutamate ionotropic receptor AMPA type subunit 1.
     
 0.922
SHISA6
Shisa family member 6.
     
 0.919
GRIA3
Glutamate ionotropic receptor AMPA type subunit 3.
     
 0.918
SHISA9
Shisa family member 9.
     
 0.917
GRIA2
Glutamate ionotropic receptor AMPA type subunit 2.
     
 0.873
SACM1L
SAC1 like phosphatidylinositide phosphatase.
     
 0.835
NRN1
Neuritin 1.
     
 0.818
ABHD12
Abhydrolase domain containing 12.
  
 
 0.804
ENSCPUP00000005385
annotation not available
  
 
 0.804
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.