STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRMT10AtRNA methyltransferase 10A. (317 aa)    
Predicted Functional Partners:
WDR4
WD repeat domain 4.
   
 0.903
TRMT6
tRNA methyltransferase 6.
   
 
 0.850
TRMT61A
tRNA methyltransferase 61A.
   
 0.766
TIMM22
Translocase of inner mitochondrial membrane 22.
   
 
  0.757
TIMM9
Translocase of inner mitochondrial membrane 9.
   
 
  0.748
PRORP
Protein only RNase P catalytic subunit.
   
 0.744
SLC47A1
Solute carrier family 47 member 1.
   
 0.734
ENSCPUP00000029573
annotation not available
   
 0.734
ENSCPUP00000029574
annotation not available
   
 0.734
RPP30
Ribonuclease P/MRP subunit p30.
   
 
  0.726
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.