STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHRNGCholinergic receptor nicotinic gamma subunit. (484 aa)    
Predicted Functional Partners:
CHRNA1
Cholinergic receptor nicotinic alpha 1 subunit.
  
0.864
CHRNB3
Cholinergic receptor nicotinic beta 3 subunit.
  
0.747
CHRNA5
Cholinergic receptor nicotinic alpha 5 subunit.
  
 
0.745
CHRNA3
Neuronal acetylcholine receptor subunit alpha-3-like.
  
0.700
LOC106894837
Neuronal acetylcholine receptor subunit alpha-7-like.
  
0.676
ENSCPUP00000018205
annotation not available
  
 
0.666
ENSCPUP00000023308
annotation not available
   
0.663
LOC106899180
Neuronal acetylcholine receptor subunit alpha-2.
  
 
0.661
CHRNA4
Neuronal acetylcholine receptor subunit alpha-4-like.
  
 
0.650
CHRND
Cholinergic receptor nicotinic delta subunit.
   
 
0.615
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.