STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSG1Large 60S subunit nuclear export GTPase 1. (655 aa)    
Predicted Functional Partners:
RPL27
Ribosomal protein L27.
 
 
 0.994
NMD3
NMD3 ribosome export adaptor.
   
 
 0.993
EIF6
Eukaryotic translation initiation factor 6.
   
 0.990
GTPBP4
GTP binding protein 4.
   
 0.989
FTSJ3
FtsJ RNA 2'-O-methyltransferase 3.
   
 0.987
PA2G4
Proliferation-associated 2G4.
   
 0.985
RSL24D1
Ribosomal L24 domain containing 1.
   
 0.983
EBNA1BP2
EBNA1 binding protein 2.
   
 0.980
PES1
Pescadillo ribosomal biogenesis factor 1.
   
 0.979
NOC2L
NOC2 like nucleolar associated transcriptional repressor.
   
 0.978
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.