STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PCSK6Proprotein convertase subtilisin/kexin type 6. (948 aa)    
Predicted Functional Partners:
FREM1
FRAS1 related extracellular matrix 1.
    
 0.851
LGR5
Leucine rich repeat containing G protein-coupled receptor 5.
   
 0.800
RXFP1
Relaxin family peptide receptor 1.
   
 0.800
LGR4
Leucine rich repeat containing G protein-coupled receptor 4.
   
 0.800
LOC106895671
Relaxin receptor 1-like.
   
 0.800
BCL10
BCL10 immune signaling adaptor.
   
 0.609
POMC
Proopiomelanocortin.
     
 0.592
PDGFB
Platelet derived growth factor subunit B.
   
 
  0.576
GHRL
Ghrelin and obestatin prepropeptide.
     
 0.571
PDGFA
Platelet derived growth factor subunit A.
     
 0.546
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.