STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SNRPA1Small nuclear ribonucleoprotein polypeptide A. (250 aa)    
Predicted Functional Partners:
PRPF8
pre-mRNA processing factor 8.
    
 0.999
SNRPF
Small nuclear ribonucleoprotein polypeptide F.
   
 0.999
SF3A1
Splicing factor 3a subunit 1.
   
 0.999
SNRPD1
Small nuclear ribonucleoprotein D1 polypeptide.
   
 0.999
SF3B4
Splicing factor 3b subunit 4.
    
 0.999
SF3A2
Splicing factor 3a subunit 2.
    
 0.999
SNRNP35
Small nuclear ribonucleoprotein U11/U12 subunit 35.
   
 0.999
SF3B1
Splicing factor 3b subunit 1.
   
 0.999
PLRG1
Pleiotropic regulator 1.
   
 0.999
CDC40
Cell division cycle 40.
    
 0.999
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.