STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FAM20BFAM20B glycosaminoglycan xylosylkinase. (409 aa)    
Predicted Functional Partners:
FAM20C
FAM20C golgi associated secretory pathway kinase.
  
 
0.878
ENSCPUP00000022801
annotation not available
    
0.823
CLCA1
Chloride channel accessory 4.
   
 
  0.700
GNPTG
N-acetylglucosamine-1-phosphate transferase subunit gamma.
     
 0.577
WFS1
Wolframin ER transmembrane glycoprotein.
     
 0.567
MBTPS1
Membrane bound transcription factor peptidase, site 1.
     
 0.565
GASK1A
Golgi associated kinase 1A.
      
 0.531
QSOX2
Quiescin sulfhydryl oxidase 2.
     
 0.526
QSOX1
Quiescin sulfhydryl oxidase 1.
     
 0.526
UXS1
UDP-glucuronate decarboxylase 1.
      
 0.513
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.