STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCPUP00000025713annotation not available (333 aa)    
Predicted Functional Partners:
ENSCPUP00000007775
annotation not available
 
      0.857
ENSCPUP00000020692
annotation not available
  
 
  0.678
ENSCPUP00000026985
annotation not available
  
 
  0.655
ENSCPUP00000024460
annotation not available
  
 
  0.648
ENSCPUP00000009787
annotation not available
  
 
  0.646
MMP13
Collagenase 3-like.
    
 0.643
MMP9
Matrix metallopeptidase 9.
    
 0.637
ENSCPUP00000007190
annotation not available
  
 
  0.617
ENSCPUP00000021424
annotation not available
  
 
  0.602
COL26A1
Collagen type XXVI alpha 1 chain.
  
 
 0.592
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.