STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BCDIN3DBCDIN3 domain containing RNA methyltransferase. (268 aa)    
Predicted Functional Partners:
HEXIM1
HEXIM P-TEFb complex subunit 1.
    
 0.905
CDK9
Cyclin dependent kinase 9.
    
 
 0.766
SART3
Spliceosome associated factor 3, U4/U6 recycling protein.
    
 
 0.628
PRPF3
pre-mRNA processing factor 3.
    
 
 0.573
METTL16
Methyltransferase like 16.
    
 
 0.566
ZC3H10
Zinc finger CCCH-type containing 10.
   
  
 0.549
RNMT
RNA guanine-7 methyltransferase.
      
 0.546
EIF4B
Eukaryotic translation initiation factor 4B.
    
 0.540
SNRPF
Small nuclear ribonucleoprotein polypeptide F.
    
   0.514
ENSCPUP00000002191
annotation not available
    
 
 0.494
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.