STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRMSpermidine synthase. (341 aa)    
Predicted Functional Partners:
AASS
Aminoadipate-semialdehyde synthase.
   
 0.983
SMS
Membrane bound transcription factor peptidase, site 2.
  
  
 0.956
NIT2
Nitrilase family member 2.
 
 
 0.951
ODC1
Ornithine decarboxylase 1.
  
 0.948
AMD1
Adenosylmethionine decarboxylase 1.
    
 0.944
MTAP
Methylthioadenosine phosphorylase.
  
 
 0.938
AGMAT
Agmatinase.
  
 
 0.937
ARG2
Arginase 2.
  
 
 0.928
SMOX
Spermine oxidase.
     
 0.915
SAT1
Spermidine/spermine N1-acetyltransferase 1.
    
 0.892
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.