STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XDHXanthine dehydrogenase. (1356 aa)    
Predicted Functional Partners:
LOC106886508
Uricase-like.
  
 
 0.908
GDA
Guanine deaminase.
 
 
 0.907
PNP
Purine nucleoside phosphorylase.
   
 
 0.880
TPMT
Thiopurine S-methyltransferase-like.
     
 0.851
ENSCPUP00000012322
annotation not available
   
 
 0.841
LOC106888319
Arylamine N-acetyltransferase, pineal gland isozyme NAT-10.
   
 
 0.836
HPRT1
Hypoxanthine phosphoribosyltransferase 1.
     
 0.835
ALDH1A3
Aldehyde dehydrogenase 1 family member A3.
   
 
 0.817
BCO1
Beta-carotene oxygenase 1.
   
 
 0.757
ACSF3
acyl-CoA synthetase family member 3.
     
 0.757
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.