STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LHX4LIM homeobox 4. (360 aa)    
Predicted Functional Partners:
ISL2
ISL LIM homeobox 2.
    
0.848
ISL1
ISL LIM homeobox 1.
    
0.848
ALX3
ALX homeobox 3.
    
0.807
LDB1
LIM domain binding 1.
    
 0.778
LDB2
LIM domain binding 2.
    
 0.752
SSBP3
Single stranded DNA binding protein 3.
    
 
 0.585
SSBP2
Single stranded DNA binding protein 2.
    
 
 0.585
ENSCPUP00000012226
annotation not available
 
 
 0.562
DMBX1
Diencephalon/mesencephalon homeobox 1.
   
 0.520
HESX1
HESX homeobox 1.
    
0.515
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.