STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCPUP00000026400annotation not available (327 aa)    
Predicted Functional Partners:
CASQ2
Calsequestrin 2.
   
 0.959
ASPH
Aspartate beta-hydroxylase.
   
 0.935
RYR3
Ryanodine receptor 3.
   
 0.922
RYR2
Ryanodine receptor 2.
   
 0.922
MYL1
Myosin light chain 1.
   
 
 0.842
ARID4A
AT-rich interaction domain 4A.
    
 0.710
ARID4B
AT-rich interaction domain 4B.
    
 0.710
ENSCPUP00000000773
annotation not available
   
 0.706
ENSCPUP00000006305
annotation not available
   
 0.670
FKBP1A
FKBP prolyl isomerase 1A.
   
 0.670
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.