STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
REC114REC114 meiotic recombination protein. (270 aa)    
Predicted Functional Partners:
TTF2
Transcription termination factor 2.
  
 
 0.972
FCSK
Fucose kinase.
  
 
 0.957
MED10
Mediator complex subunit 10.
     
 0.917
LIG3
DNA ligase 3.
   
 0.907
CCNC
Cyclin C.
   
 
  0.907
TKT
Transketolase.
    
 0.886
GMDS
GDP-mannose 4,6-dehydratase.
    
 0.883
POLB
DNA polymerase beta.
    
 0.858
POLL
DNA polymerase lambda.
    
 0.858
LIG4
DNA ligase 4.
   
 0.849
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.