STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LIN9Lin-9 DREAM MuvB core complex component. (413 aa)    
Predicted Functional Partners:
LIN52
Lin-52 DREAM MuvB core complex component.
    
 0.998
MYBL2
MYB proto-oncogene like 2.
    
 0.996
RBBP4
RB binding protein 4, chromatin remodeling factor.
    
 0.980
ENSCPUP00000000706
annotation not available
   
 0.963
RBBP7
RB binding protein 7, chromatin remodeling factor.
    
 0.963
LIN54
Lin-54 DREAM MuvB core complex component.
   
 0.963
WDR73
WD repeat domain 73.
    
 0.949
MYBL1
MYB proto-oncogene like 1.
    
 0.940
MYB
MYB proto-oncogene, transcription factor.
    
 0.940
RB1
RB transcriptional corepressor 1.
   
 0.935
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.