STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
THBS3Thrombospondin 3. (860 aa)    
Predicted Functional Partners:
ITGB5
Integrin subunit beta 5.
    
 0.879
THBS1
Thrombospondin 1.
  
 
0.878
ITGB4
Integrin subunit beta 4.
    
 0.868
THBS2
Thrombospondin 2.
  
 
 
0.868
ITGB3
Integrin subunit beta 3.
    
 0.868
ITGA6
Integrin subunit alpha 6.
    
 0.864
ITGB6
Integrin subunit beta 6.
    
 0.862
ITGB1
Integrin subunit beta 1.
    
 0.862
ITGA4
Integrin subunit alpha 4.
    
 0.860
ITGAV
Integrin subunit alpha V.
    
 0.858
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.