STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106887754F-box only protein 6-like. (305 aa)    
Predicted Functional Partners:
SKP1
S-phase kinase associated protein 1.
    
 0.974
CUL1
Cullin 1.
    
 0.901
FBXO2
F-box only protein 2-like.
  
  
0.859
FBXO4
F-box protein 4.
     
 0.826
SKP2
S-phase kinase associated protein 2.
     
 0.813
RBX1
Ring-box 1.
    
 0.761
FBXO16
F-box protein 16.
    
 0.694
CUL3
Cullin 3.
    
 0.644
ENSCPUP00000010230
annotation not available
    
 0.638
ENSCPUP00000027571
annotation not available
    
  0.625
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.