STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MTHFRMethylenetetrahydrofolate reductase. (651 aa)    
Predicted Functional Partners:
CTH
Cystathionine gamma-lyase.
  
 0.994
MTR
5-methyltetrahydrofolate-homocysteine methyltransferase.
  
 
 0.980
LOC106901829
Betaine--homocysteine S-methyltransferase 1.
  
 
 0.958
ENSCPUP00000021853
annotation not available
  
 
 0.958
ENSCPUP00000012205
annotation not available
    
 0.947
ATIC
Bifunctional purine biosynthesis protein PURH.
    
 0.946
GLDC
Glycine decarboxylase.
    
 0.946
FTCD
Formimidoyltransferase cyclodeaminase.
    
 0.945
MAT1A
Methionine adenosyltransferase 1A.
  
 
 0.943
LOC106897493
S-adenosylmethionine synthase isoform type-2-like.
  
 
 0.943
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.