STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DMXL2Dmx like 2. (3058 aa)    
Predicted Functional Partners:
ROGDI
Rogdi atypical leucine zipper.
    
 0.979
SKP1
S-phase kinase associated protein 1.
    
 0.954
DMXL1
Dmx like 1.
  
  
 
0.859
ATP6V1E1
ATPase H+ transporting V1 subunit E1.
    
 
 0.781
ATP6V1B2
ATPase H+ transporting V1 subunit B2.
    
 
 0.756
ATP6V1B1
ATPase H+ transporting V1 subunit B1.
    
 
 0.756
WDR7
WD repeat domain 7.
   
 0.710
WDR72
WD repeat domain 72.
   
 0.710
ATP6V1C2
ATPase H+ transporting V1 subunit C2.
    
 
 0.687
RAB3GAP1
Rab3 GTPase-activating protein catalytic subunit.
   
 
 0.655
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.