STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MKKSMcKusick-Kaufman syndrome. (572 aa)    
Predicted Functional Partners:
CCT2
Chaperonin containing TCP1 subunit 2.
   
 0.997
CCT7
Chaperonin containing TCP1 subunit 7.
   
 0.997
CCT5
Chaperonin containing TCP1 subunit 5.
   
0.997
CCT6B
Chaperonin containing TCP1 subunit 6A.
   
 0.995
CCT8
Chaperonin containing TCP1 subunit 8.
   
 0.995
CCT4
Chaperonin containing TCP1 subunit 4.
   
 0.991
CCT3
Chaperonin containing TCP1 subunit 3.
   
0.988
ERMARD
ER membrane associated RNA degradation.
   
 0.969
BBS12
Bardet-Biedl syndrome 12.
    
 0.966
FAM161A
FAM161 centrosomal protein A.
   
 0.966
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.