STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SLC12A1Solute carrier family 12 member 1. (1097 aa)    
Predicted Functional Partners:
LOC106896183
Uncharacterized LOC106896183.
   
 0.605
NUDT12
Nudix hydrolase 12.
   
 0.576
ALKBH3
alkB homolog 3, alpha-ketoglutaratedependent dioxygenase.
   
 0.572
SLC3A1
Solute carrier family 3 member 1.
   
 0.572
LOC106886497
Pancreatic alpha-amylase-like.
   
 0.572
ALKBH2
alkB homolog 2, alpha-ketoglutarate dependent dioxygenase.
   
 0.572
KIAA0513
KIAA0513 ortholog.
   
 0.572
LOC106896691
Cytosolic 5'-nucleotidase 1B-like.
   
  0.547
TK2
Thymidine kinase 2.
    
  0.545
NT5E
5'-nucleotidase ecto.
    
 0.542
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.