STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHD5Chromodomain helicase DNA binding protein 5. (1881 aa)    
Predicted Functional Partners:
LEO1
LEO1 homolog, Paf1/RNA polymerase II complex component.
   
 0.925
GATAD2A
GATA zinc finger domain containing 2A.
   
 0.891
RBBP4
RB binding protein 4, chromatin remodeling factor.
   
 0.870
RBBP7
RB binding protein 7, chromatin remodeling factor.
   
 0.867
GATAD2B
GATA zinc finger domain containing 2B.
   
 0.857
MBD3
methyl-CpG binding domain protein 3.
    
 0.826
MBD2
methyl-CpG binding domain protein 2.
    
 0.826
KDM1A
Lysine demethylase 1A.
   
 0.788
HDAC8
Histone deacetylase 8.
   
 0.781
HDAC2
Histone deacetylase 2.
   
 0.781
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.