STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CA9Carbonic anhydrase 9. (465 aa)    
Predicted Functional Partners:
RPF2
Ribosome production factor 2 homolog.
   
 
 0.648
CA12
Carbonic anhydrase 12.
  
  
0.601
RRS1
Ribosome biogenesis regulator 1 homolog.
   
   0.582
RPL11
Ribosomal protein L11.
    
 
 0.558
RPL5
Ribosomal protein L5.
    
 
 0.539
TMEM121B
Transmembrane protein 121B.
    
 
 0.539
WDR43
WD repeat domain 43.
   
    0.461
CA1
Carbonic anhydrase 1.
  
 
0.449
CA13
Carbonic anhydrase 13.
  
 
0.446
CA8
Carbonic anhydrase 8.
  
 
 
0.443
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.