STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TARS1threonyl-tRNA synthetase 1. (711 aa)    
Predicted Functional Partners:
TARS3
threonine--tRNA ligase, cytoplasmic-like.
  
 
 
0.894
EIF4E2
Eukaryotic translation initiation factor 4E family member 2.
   
 
 0.885
YARS1
tyrosyl-tRNA synthetase 1.
  
 
 0.860
LARS1
leucyl-tRNA synthetase 1.
  
 
 0.843
EPRS1
glutamyl-prolyl-tRNA synthetase 1.
  
 
 0.833
MTIF2
Mitochondrial translational initiation factor 2.
  
 0.781
MLST8
MTOR associated protein, LST8 homolog.
   
 0.774
MRPL15
Mitochondrial ribosomal protein L15.
   
 
 0.769
MRPL22
Mitochondrial ribosomal protein L22.
   
 
 0.768
PIGM
Phosphatidylinositol glycan anchor biosynthesis class M.
     
 0.767
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.