STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAI14Retinoic acid induced 14. (979 aa)    
Predicted Functional Partners:
LEO1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.725
KIF6
Kinesin family member 6.
    
 0.623
CHUK
Component of inhibitor of nuclear factor kappa B kinase complex.
    
 0.590
IKBKB
Inhibitor of nuclear factor kappa B kinase subunit beta.
    
 0.590
IFT81
Intraflagellar transport 81.
    
 0.584
RPS3
Ribosomal protein S3.
    
 0.583
MARS1
methionyl-tRNA synthetase 1.
   
 0.581
IFT88
Intraflagellar transport 88.
   
 0.575
IFT52
Intraflagellar transport 52.
    
 0.573
IFT80
Intraflagellar transport 80.
    
 0.573
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.