STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAD1RAD1 checkpoint DNA exonuclease. (281 aa)    
Predicted Functional Partners:
HUS1
HUS1 checkpoint clamp component.
    
 0.999
RAD17
RAD17 checkpoint clamp loader component.
   
 0.996
RFC4
Replication factor C subunit 4.
   
 0.991
WRN
WRN RecQ like helicase.
   
 0.991
SLF1
SMC5-SMC6 complex localization factor 1.
    
 0.988
RHNO1
RAD9-HUS1-RAD1 interacting nuclear orphan 1.
    
  0.977
RFC5
Replication factor C subunit 5.
   
 0.975
RFC2
Replication factor C subunit 2.
   
 0.970
ATR
ATR serine/threonine kinase.
    
 0.969
ENSCPUP00000006119
annotation not available
    
 0.960
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.