STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POU6F1POU class 6 homeobox 1. (279 aa)    
Predicted Functional Partners:
SNAPC4
Small nuclear RNA activating complex polypeptide 4.
    
  0.583
BSX
Brain specific homeobox.
    
 0.569
SALL4
Spalt like transcription factor 4.
    
 0.527
SALL3
Spalt like transcription factor 3.
    
 0.527
SALL1
Spalt like transcription factor 1.
    
 0.527
GTF2B
General transcription factor IIB.
    
 0.520
SNAPC3
Small nuclear RNA activating complex polypeptide 3.
   
 
  0.474
TBPL2
TATA-box binding protein like 2.
    
 0.465
TBPL1
TATA-box binding protein like 1.
    
 0.465
TBP
TATA-box binding protein.
    
 0.465
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.