STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
THRAP3Thyroid hormone receptor associated protein 3. (967 aa)    
Predicted Functional Partners:
BCLAF1
BCL2 associated transcription factor 1.
  
0.988
PNN
Pinin, desmosome associated protein.
   
 0.965
EIF4A3
Eukaryotic translation initiation factor 4A3.
   
  0.952
MED14
Mediator complex subunit 14.
     
 0.950
MAGOH
Mago homolog, exon junction complex subunit.
    
  0.948
MED1
Mediator complex subunit 1.
   
 0.947
CASC3
CASC3 exon junction complex subunit.
   
  0.937
RBM8A
RNA binding motif protein 8A.
   
 0.937
MED16
Mediator complex subunit 16.
    
 0.935
MED26
Mediator complex subunit 26.
    
  0.934
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.