STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHF13PHD finger protein 13. (140 aa)    
Predicted Functional Partners:
MCRS1
Microspherule protein 1.
    
 0.909
KANSL2
KAT8 regulatory NSL complex subunit 2.
    
 0.878
TEX30
Testis expressed 30.
    
 0.811
KANSL3
KAT8 regulatory NSL complex subunit 3.
    
 0.811
HCFC2
Host cell factor C2.
    
 0.783
RBBP5
RB binding protein 5, histone lysine methyltransferase complex subunit.
    
 0.783
BRMS1L
BRMS1 like transcriptional repressor.
    
 0.780
SUDS3
SDS3 homolog, SIN3A corepressor complex component.
    
 0.780
PHF12
PHD finger protein 12.
   
 0.779
VPS72
Vacuolar protein sorting 72 homolog.
    
 0.773
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.