STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VWA5B1Von Willebrand factor A domain containing 5B1. (936 aa)    
Predicted Functional Partners:
RPF2
Ribosome production factor 2 homolog.
   
 
 0.648
RRS1
Ribosome biogenesis regulator 1 homolog.
   
   0.582
RPL11
Ribosomal protein L11.
    
 
 0.558
RPL5
Ribosomal protein L5.
    
 
 0.539
TMEM121B
Transmembrane protein 121B.
    
 
 0.539
WDR43
WD repeat domain 43.
   
    0.461
GTPBP4
GTP binding protein 4.
   
    0.443
WDR36
WD repeat domain 36.
   
    0.434
PWP2
PWP2 small subunit processome component.
   
    0.434
NOC2L
NOC2 like nucleolar associated transcriptional repressor.
   
    0.434
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.