STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UBXN10UBX domain protein 10. (223 aa)    
Predicted Functional Partners:
TTC26
Tetratricopeptide repeat domain 26.
    
 0.995
IFT74
Intraflagellar transport 74.
    
 0.995
IFT88
Intraflagellar transport 88.
    
  0.995
UBXN2A
UBX domain protein 2A.
    
 
 0.974
UBXN6
UBX domain protein 6.
    
 
 0.973
ASPSCR1
ASPSCR1 tether for SLC2A4, UBX domain containing.
    
 
 0.963
NSFL1C
NSFL1 cofactor.
    
 
 0.963
VCP
Valosin containing protein.
    
 
 0.954
UFD1
Ubiquitin recognition factor in ER associated degradation 1.
    
 
 0.947
IFT81
Intraflagellar transport 81.
    
 0.934
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.