STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PEX11APeroxisomal biogenesis factor 11 alpha. (245 aa)    
Predicted Functional Partners:
ENSCPUP00000011824
annotation not available
   
 0.966
PEX13
Peroxisomal biogenesis factor 13.
   
 0.926
PEX14
Peroxisomal biogenesis factor 14.
    
 0.922
PEX11G
Peroxisomal biogenesis factor 11 gamma.
    
 0.881
PEX12
Peroxisomal biogenesis factor 12.
   
 0.874
PEX3
Peroxisomal biogenesis factor 3.
   
 0.859
FAM185A
Family with sequence similarity 185 member A.
    
 0.839
PEX2
Peroxisomal biogenesis factor 2.
   
 0.820
PEX10
Peroxisomal biogenesis factor 10.
    
 0.799
ENSCPUP00000008192
annotation not available
    
 0.799
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.