STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FANCIFA complementation group I. (1339 aa)    
Predicted Functional Partners:
FANCD2
FA complementation group D2.
   
 0.999
FANCL
FA complementation group L.
    
 0.996
FANCM
FA complementation group M.
   
 0.989
USP1
Ubiquitin specific peptidase 1.
   
 0.981
FANCG
FA complementation group G.
   
 0.979
FANCA
FA complementation group A.
   
 0.979
BRCA1
BRCA1 DNA repair associated.
   
 0.979
UBE2T
Ubiquitin conjugating enzyme E2 T.
   
 0.979
RPS27A
Ribosomal protein S27a.
    
  0.977
FANCF
FA complementation group F.
    
 0.976
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.