STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PSMC6Proteasome 26S subunit, ATPase 6. (379 aa)    
Predicted Functional Partners:
PSMA5
Proteasome 20S subunit alpha 5.
  
 0.999
PSMC4
Proteasome 26S subunit, ATPase 4.
  
0.999
PSMA3
Proteasome 20S subunit alpha 3.
  
 0.999
PSMC1
Proteasome 26S subunit, ATPase 1.
 
0.999
PSMD10
Proteasome 26S subunit, non-ATPase 10.
   
 0.999
PSMD14
Proteasome 26S subunit, non-ATPase 14.
  
 0.999
PSMA6
Proteasome 20S subunit alpha 6.
  
 0.999
PSMD3
Proteasome 26S subunit, non-ATPase 3.
   
 0.999
ENSCPUP00000010328
annotation not available
    
 0.999
ADRM1
Adhesion regulating molecule 1.
   
 0.999
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.