STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106885081Transthyretin. (150 aa)    
Predicted Functional Partners:
LOC106886508
Uricase-like.
  
 
 0.900
GC
GC vitamin D binding protein.
   
  
 0.745
STRA6
Stimulated by retinoic acid 6.
   
 0.724
APP
Amyloid beta precursor protein.
    
 0.712
ALB
Albumin.
   
 
 0.691
KMO
Kynurenine 3-monooxygenase.
  
 
 0.680
COQ6
Coenzyme Q6, monooxygenase.
  
 
  0.633
SQLE
Squalene epoxidase.
  
 
  0.633
RBP1
Retinol binding protein 1.
   
 
 0.630
LOC106896888
Solute carrier family 25 member 33-like.
    
 0.572
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.