STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106893937C5a anaphylatoxin chemotactic receptor 1-like. (350 aa)    
Predicted Functional Partners:
C5
Complement C5.
    
 0.915
ENSCPUP00000000773
annotation not available
    
  0.762
LOC106896732
Complement C4-B-like.
    
 0.660
C3
Complement C3-like.
    
 0.660
LOC106902556
Complement C4-like.
    
 0.660
POMC
Proopiomelanocortin.
    
 0.657
PNOC
Prepronociceptin.
    
  0.620
GAL
Galanin and GMAP prepropeptide.
    
 0.615
PENK
Proenkephalin.
    
 0.611
SST
Somatostatin.
    
  0.608
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.