STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FKBP15FKBP prolyl isomerase 15. (1256 aa)    
Predicted Functional Partners:
GOSR1
Golgi SNAP receptor complex member 1.
    
 0.818
GORASP2
Golgi reassembly stacking protein 2.
    
 0.718
GORASP1
Golgi reassembly stacking protein 1.
    
 0.718
VPS29
VPS29 retromer complex component.
   
 
 0.690
USO1
USO1 vesicle transport factor.
   
 0.682
ENSCPUP00000004556
annotation not available
   
 0.682
CAPZA1
Capping actin protein of muscle Z-line subunit alpha 1.
    
 0.639
SCFD1
Sec1 family domain containing 1.
    
 0.623
TMED2
Transmembrane p24 trafficking protein 2.
    
  0.615
LMAN1
Lectin, mannose binding 1.
   
 
 0.605
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.