STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GARS1glycyl-tRNA synthetase 1. (725 aa)    
Predicted Functional Partners:
EPRS1
glutamyl-prolyl-tRNA synthetase 1.
  
 
 0.978
YARS1
tyrosyl-tRNA synthetase 1.
  
 
 0.958
POLG
DNA polymerase gamma, catalytic subunit.
   
 0.958
SARS1
seryl-tRNA synthetase 1.
   
  
 0.938
AARS1
alanyl-tRNA synthetase 1.
  
 
 0.866
IARS1
isoleucyl-tRNA synthetase 1.
  
 
 0.856
MARS1
methionyl-tRNA synthetase 1.
  
 
 0.838
DNA2
DNA replication helicase/nuclease 2.
 
   
 0.811
AARS2
alanyl-tRNA synthetase 2, mitochondrial.
  
 
 0.803
LARS1
leucyl-tRNA synthetase 1.
  
 
 0.798
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.