STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WDR48WD repeat domain 48. (680 aa)    
Predicted Functional Partners:
USP1
Ubiquitin specific peptidase 1.
    
 0.987
FANCI
FA complementation group I.
    
 0.926
WDR20
WD repeat domain 20.
    
 0.908
DMWD
DM1 locus, WD repeat containing.
    
 0.908
USP46
Ubiquitin specific peptidase 46.
    
 0.907
USP12
Ubiquitin specific peptidase 12.
    
 0.900
LOC106895681
Ubiquitin carboxyl-terminal hydrolase 12-like.
    
 0.900
RPS27A
Ribosomal protein S27a.
    
 0.885
ENSCPUP00000011075
annotation not available
    
  0.880
FANCD2
FA complementation group D2.
    
 0.857
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.