STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WDR86WD repeat domain 86. (398 aa)    
Predicted Functional Partners:
SKP1
S-phase kinase associated protein 1.
    
 0.916
RBX1
Ring-box 1.
    
 0.911
CDC6
Cell division cycle 6.
    
 0.879
CUL1
Cullin 1.
    
 0.871
CUL3
Cullin 3.
    
 0.834
ENSCPUP00000011075
annotation not available
    
  0.764
MRPL2
Mitochondrial ribosomal protein L2.
    
 0.757
RNF7
Ring finger protein 7.
    
 0.748
NUDT12
Nudix hydrolase 12.
    
  0.739
SKP2
S-phase kinase associated protein 2.
    
 0.719
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.