STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LGI2Leucine rich repeat LGI family member 2. (540 aa)    
Predicted Functional Partners:
ADAM23
ADAM metallopeptidase domain 23.
     
 0.825
ENSCPUP00000000773
annotation not available
    
  0.808
ADAM22
ADAM metallopeptidase domain 22.
     
 0.801
ADAM11
ADAM metallopeptidase domain 11.
     
 0.766
CECR2
Cat eye syndrome chromosome region, candidate 2.
    
 0.617
FBXL17
F-box and leucine rich repeat protein 17.
    
 
 0.548
C1QC
Complement C1q C chain.
    
  0.530
MYSM1
Histone H2A deubiquitinase MYSM1.
    
 0.494
RPS27A
Ribosomal protein S27a.
    
  0.492
LOC106888290
Tubulin beta chain-like.
    
  0.491
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.