STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SLCO1A2Solute carrier organic anion transporter family member 1A2. (685 aa)    
Predicted Functional Partners:
RECQL
RecQ like helicase.
      
 0.513
ENSCPUP00000028200
annotation not available
    
  0.458
PYROXD1
Pyridine nucleotide-disulphide oxidoreductase domain 1.
      
 0.445
LOC106887983
Synaptojanin-2-binding protein-like.
    
  0.441
SLC16A10
Solute carrier family 16 member 10.
     
 0.436
SLC16A2
Solute carrier family 16 member 2.
     
 0.436
ENSCPUP00000002454
annotation not available
    
  0.424
ENSCPUP00000024862
annotation not available
    
  0.424
ENSCPUP00000027110
annotation not available
    
  0.424
CACNA1G
Calcium voltage-gated channel subunit alpha1 G.
    
  0.413
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.